U
    ½mœdÒ!  ã                   @   s.  d Z ddlZddlZddlZddlmZ ddlmZ ddl	m
Z
 ddl	mZ ddl	mZ ddlmZmZmZmZ dd	lmZ dd
lmZ ddlmZ ddlmZ d(dd„Zdd„ Zdd„ Zdd„ Zd)dd„Zej  ddddg¡dd„ ƒZ!ej  ddd ge"d!fdd ge"d!fd"d ge#d#fg¡d$d%„ ƒZ$d&d'„ Z%dS )*z" Test the graphical_lasso module.
é    N)Úlinalg)Úassert_allclose)Úassert_array_almost_equal)Úassert_array_less)Ú_convert_container)Úgraphical_lassoÚGraphicalLassoÚGraphicalLassoCVÚempirical_covariance)Úmake_sparse_spd_matrix)ÚStringIO)Úcheck_random_state)Údatasetsc                 C   st  d}d}t | ƒ} t|d| d�}t |¡}| jt |¡||d�}t|ƒ}dD ]”}tƒ }tƒ }	dD ]R}
t	|d||
d	�\}}}|||
< ||	|
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|¡j\}}|d
ks^tt |¡d
ƒ q^t|d |d dd� t|	d |	d dd� qJtdd� |¡}| |¡ t|j|d dd� t|j|d dd� || d
¡ }tƒ }dD ]"}t|d� |¡j}| |¡ �q:t|d
 |d ƒ d S )Né   éd   gffffffî?©ÚalphaÚrandom_state©Úsize)ç        çš™™™™™¹?ç      Ð?©ÚcdÚlarsT)Úreturn_costsr   Úmoder   r   r   é   ©Údecimalr   )r   )FT)Úassume_centeredé   )r   r   r   ÚinvÚmultivariate_normalÚnpÚzerosr
   Údictr   ÚarrayÚTr   Údiffr   r   ÚfitZscoreZcovariance_ÚmeanÚlistZ
precision_Úappend)r   ÚdimÚ	n_samplesÚprecÚcovÚXÚemp_covr   ZcovsZicovsÚmethodZcov_Zicov_ZcostsZdual_gapÚmodelÚZZprecsr!   Zprec_© r8   úf/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/sklearn/covariance/tests/test_graphical_lasso.pyÚtest_graphical_lasso   sD    
   ÿ
r:   c               	   C   s¬   t  ddddgddddgddddgddddgg¡} t  d	dd
dgddddgd
dddgddddgg¡}t ¡ j}t|ƒ}dD ],}t|dd|d�\}}t|| ƒ t||ƒ qzd S )NgJSoÓÀËå?r   g¥Ú§ã1Ñ?g¾¥{!<™?g-ªêŠ¾'È?gî[­—Ã@g˜ˆ·Î¿]Ò?çóÞÿdßwâ?glåÊE!Nø?g¦',ñ€²À¿g5ÒRy;2@gŽg†C%dÖ?gXéIô�Å¿g—Ìvý?r   g      ð?F©r   r   r   ©r%   r(   r   Ú	load_irisÚdatar
   r   r   )Úcov_RÚicov_Rr3   r4   r5   r2   Úicovr8   r8   r9   Útest_graphical_lasso_irisE   s(    
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rC   c                  C   s„   t  ddgddgg¡} t  ddgddgg¡}t ¡ jd d …dd …f }t|ƒ}dD ],}t|d	d
|d�\}}t|| ƒ t||ƒ qRd S )Ng×ê–Ã@gŒHZÖýò?r;   gÃÉ‰¸1tø?gO{Ì“%	Àg¸4#(#e @é   r   r   Fr<   r=   )Z	cov_skggmZ
icov_skggmr3   r4   r5   r2   rB   r8   r8   r9   Útest_graph_lasso_2D`   s    
rE   c               	   C   sÌ   t  dd¡} t  ddddgdddd	gd
dddgdddd	gg¡}t  ddddgddddgddddgddddgg¡}t ¡ j| d d …f }t|ƒ}dD ]4}t|dd|d�\}}t||dd � t||dd � q’d S )!Né
   é   g{®Gáz´?gtì<­i­?g­üªÈÑb?gHâŽWµY?gÕ«rûƒµ?gHýç´�Nk?gÛ¨šxV4b?gå¢ÈÑb?gè`Ü´�Nk?gR*è´�N{?gLÆgö×�?g:glWµY?gEë’xV4b?gR§°%l8@gƒ¯,ôèÔ0Àr   gŸ¹éÔ0ÀgÁCáKZ8@gû‘°ÜÓÀg      )ÀgTs —ÜÓÀgìGÂrO#c@gm>ãÿÿ(Àg     è|@r   g{®Gáz„?Fr<   é   r   )	r%   Zaranger(   r   r>   r?   r
   r   r   )Úindicesr@   rA   r3   r4   r5   r2   rB   r8   r8   r9   Ú"test_graphical_lasso_iris_singularn   s4    
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üÿ   ÿ
rJ   r"   c                 C   sr   d}d}t | ƒ} t|d| d�}t |¡}| jt |¡||d�}tj}z t	ƒ t_t
dddd� |¡ W 5 |t_X d S )	NrH   é   g¸…ëQ¸î?r   r   r   r   )ÚverboseÚalphasÚtol)r   r   r   r#   r$   r%   r&   ÚsysÚstdoutr   r	   r+   )r   r/   r0   r1   r2   r3   Úorig_stdoutr8   r8   r9   Útest_graphical_lasso_cvŽ   s    
rR   Úalphas_container_typer-   Útupler(   c              	   C   s|   t  ddddgddddgddddgddddgg¡}t j d¡}|jddddg|d	d
�}tddg| ƒ}t|ddd� |¡ dS )z’Check that we can pass an array-like to `alphas`.

    Non-regression test for:
    https://github.com/scikit-learn/scikit-learn/issues/22489
    çš™™™™™é?r   çš™™™™™É?çš™™™™™Ù?ç333333Ó?r   çffffffæ?r   éÈ   ©r,   r2   r   g{®Gáz”?ç¸…ëQ¸ž?r"   ©rM   rN   Zn_jobsN)r%   r(   ÚrandomÚRandomStater$   r   r	   r+   )rS   Útrue_covÚrngr3   rM   r8   r8   r9   Ú'test_graphical_lasso_cv_alphas_iterable    s    
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üÿrb   zalphas,err_type,err_msgg{®Gáz”¿r\   zmust be > 0Z
not_numberzmust be an instance of floatc              	   C   sˆ   t  ddddgddddgddddgddddgg¡}t j d¡}|jddddg|d	d
�}tj||d�� t| ddd� |¡ W 5 Q R X dS )z²Check that if an array-like containing a value
    outside of (0, inf] is passed to `alphas`, a ValueError is raised.
    Check if a string is passed, a TypeError is raised.
    rU   r   rV   rW   rX   r   rY   r   rZ   r[   )Úmatchr"   r]   N)	r%   r(   r^   r_   r$   ÚpytestZraisesr	   r+   )rM   Zerr_typeÚerr_msgr`   ra   r3   r8   r8   r9   Ú,test_graphical_lasso_cv_alphas_invalid_arrayµ   s    
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üÿrf   c               	      s"  d} d}d}t  ddddgddddgdddd	gddd	d
gg¡}t j d¡}|jddddg|dd�}t| ||d� |¡‰ ˆ j}|| d }dg}dd„ t| ƒD ƒ}	||	 D ]$}
|
|ks¸t	‚t
||
 ƒ|ks¨t	‚q¨t  ‡ fdd„|	D ƒ¡}|jdd�}|jdd�}tˆ jd |ƒ tˆ jd |ƒ d S )Nr   rH   é   rU   r   rV   rW   rX   r   rY   r   rZ   r[   )ZcvrM   Ún_refinementsr"   rM   c                 S   s   g | ]}d |› d�‘qS )ÚsplitZ_test_scorer8   )Ú.0Úir8   r8   r9   Ú
<listcomp>è   s     z2test_graphical_lasso_cv_scores.<locals>.<listcomp>c                    s   g | ]}ˆ j | ‘qS r8   )Úcv_results_)rj   Úkey©r2   r8   r9   rl   í   s     )ZaxisZmean_test_scoreZstd_test_score)r%   r(   r^   r_   r$   r	   r+   rm   ÚrangeÚAssertionErrorÚlenZasarrayr,   Zstdr   )ZsplitsZn_alphasrh   r`   ra   r3   Z
cv_resultsZtotal_alphasÚkeysZ
split_keysrn   Z	cv_scoresZexpected_meanZexpected_stdr8   ro   r9   Útest_graphical_lasso_cv_scoresÑ   s6    
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üÿÿrt   )r   )r"   )&Ú__doc__rO   rd   Únumpyr%   Zscipyr   Znumpy.testingr   Zsklearn.utils._testingr   r   r   Zsklearn.covariancer   r   r	   r
   Zsklearn.datasetsr   Úior   Zsklearn.utilsr   Zsklearnr   r:   rC   rE   rJ   rR   ÚmarkZparametrizerb   Ú
ValueErrorÚ	TypeErrorrf   rt   r8   r8   r8   r9   Ú<module>   s:   
+ 

ýþ
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