U
    Ãmœdº  ã                   @   sª   d dl Zd dlZd dlmZ d dlmZ d dlm	Z	 d dl
mZ d dlmZ d dlmZ G dd	„ d	ƒZG d
d„ deƒZG dd„ deƒZG dd„ deƒZG dd„ deƒZdS )é    N)ÚGLM)Úfamilies)Úlinks)ÚGEE)ÚIndependence)Úassert_allclosec                   @   s   e Zd Zdd„ Zdd„ ZdS )ÚCheckGEEGLMc                 C   s(   | j }| j}t|jj|jjddd� d S ©Ng�íµ ÷Æ°>g»½×Ùß|Û=)ZrtolZatol)Úresult1Úresult2r   ÚparamsÚvalues©ÚselfZres1Zres2© r   ú^/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/statsmodels/genmod/tests/test_gee_glm.pyÚ
test_basic   s     ÿzCheckGEEGLM.test_basicc                 C   st   | j }| j}t|j|jddd� t|j|jddd� t|j|jddd� t|j|jddd� t|j|jddd� d S r	   )r
   r   r   Zresid_responseZresid_pearsonZresid_devianceZresid_anscombeZresid_workingr   r   r   r   Ú
test_resid   s,    
 ÿ
 ÿ
 ÿ
 ÿ
 ÿzCheckGEEGLM.test_residN)Ú__name__Ú
__module__Ú__qualname__r   r   r   r   r   r   r      s   r   c                   @   s   e Zd Zedd„ ƒZdS )ÚTestCompareLogitc                 C   sÀ   t ƒ }t ¡ }tj d¡ dtjjdd�dk  }tjjdd�}tjjdd�}tjjdd�}tjjdddd�}t 	||||dœ¡}t
jd||||d	�}	|	 ¡ | _tjd||d
�}
|
jdd�| _d S ©Néö é   éd   ©Úsizer   é   ©ÚYÚX1ÚX2ÚX3úY ~ X1 + X2 + X3©ÚfamilyZ
cov_struct©Údatar&   F©Zdisp)r   r   ZBinomialÚnpÚrandomÚseedÚnormalÚrandintÚpdÚ	DataFramer   Úfrom_formulaÚfitr
   r   r   ©ÚclsÚvsr&   r    r!   r"   r#   ÚgroupsÚDZmod1Zmod2r   r   r   Úsetup_class(   s     
 ÿ
zTestCompareLogit.setup_classN©r   r   r   Úclassmethodr8   r   r   r   r   r   &   s   r   c                   @   s   e Zd Zedd„ ƒZdS )ÚTestComparePoissonc                 C   sÂ   t ƒ }t ¡ }tj d¡ t dtjjdd� ¡}tjjdd�}tjjdd�}tjjdd�}tjjdddd�}t	 
||||dœ¡}tjd||||d	�}	|	 ¡ | _tjd||d
�}
|
jdd�| _d S r   )r   r   ZPoissonr*   r+   r,   Úexpr-   r.   r/   r0   r   r1   r2   r
   r   r   r3   r   r   r   r8   ?   s     
 ÿ
zTestComparePoisson.setup_classNr9   r   r   r   r   r;   =   s   r;   c                   @   s   e Zd Zedd„ ƒZdS )ÚTestCompareGaussianc           
      C   s´   t ƒ }t ¡ }tj d¡ tjjdd�}tjjdd�}tjjdd�}tjjdd�}t t d¡t 	d¡¡}t
 ||||dœ¡}tjd||||d�}	|	 ¡ | _tjd|d	� ¡ | _d S )
Nr   r   r   é   é   r   r$   r%   )r(   )r   r   ZGaussianr*   r+   r,   r-   ZkronZarangeZonesr/   r0   r   r1   r2   r
   r   r   )
r4   r5   r&   r    r!   r"   r#   r6   r7   Úmdr   r   r   r8   V   s    
 ÿ
zTestCompareGaussian.setup_classNr9   r   r   r   r   r=   T   s   r=   c                   @   s   e Zd Zedd„ ƒZdS )ÚTestCompareGammac                 C   sÊ   t ƒ }tjt ¡ d�}tj d¡ t dtjj	dd� ¡}tjj	dd�}tjj	dd�}tjj	dd�}tjj
dddd�}t ||||dœ¡}tjd	||||d
�}	|	 ¡ | _tjd	||d�}
|
jdd�| _d S )N)Úlinkr   gš™™™™™¹?r   r   r   r   r   r$   r%   r'   Fr)   )r   r   ÚGammar   ÚLogr*   r+   r,   r<   r-   r.   r/   r0   r   r1   r2   r
   r   r   r3   r   r   r   r8   m   s     
 ÿ
zTestCompareGamma.setup_classNr9   r   r   r   r   rA   k   s   rA   )Únumpyr*   Zpandasr/   Z+statsmodels.genmod.generalized_linear_modelr   Zstatsmodels.genmodr   Zstatsmodels.genmod.familiesr   Z3statsmodels.genmod.generalized_estimating_equationsr   Zstatsmodels.genmod.cov_structr   Znumpy.testingr   r   r   r;   r=   rA   r   r   r   r   Ú<module>   s   