U
    ÅmœdØ  ã                   @   s¦   d dl Z d dlZd dlZd dlmZ d dlmZ d dlm	Z	 d dl
mZ d dlZd dlmZmZmZmZmZmZ e ej¡jZdd„ Zdd
d„Zdd„ Zddd„ZdS )é    N)Ú
coo_matrix)Úconnected_components)Úcombinations)Úrejection_sampleÚ	make_heapÚdeheap_sortÚsimple_heap_pushÚhas_been_visitedÚmark_visitedc                    s  t j‰t j‰ | j‰| jj‰| jj‰| j‰tj	ddtj
jd d d… tj
jtj
jtj
jd d d… tj
jd d d… tj
jtj
jtj
jtj
jtj
jd d d… tj
jd d d… tj
jd d d… tj
jd d …d d d…f tj
jtj
jtj
jtj
jdœd�‡ ‡‡‡‡‡fdd„ƒ}|S )NTé   )Úcurrent_queryÚiÚjÚheap_prioritiesÚheap_indicesÚ	candidateÚvertexÚdÚd_vertexÚvisitedÚindicesÚindptrÚdataZ	heap_sizeÚdistance_scaleÚdistance_boundZ
seed_scale)ZfastmathZnogilÚlocalsc                    sÔ  t | jd |ƒ}d| }t| jd ƒD �]¦}d|d d …< ˆˆksHˆˆ krxt | | d  ¡ ¡}|dkr&| | | }	q€q&n| | }	|d | }
|d | }dd„ tdƒD ƒ}|jd }t|ƒD ]H}t || ¡}ˆˆ| |	ƒ}t|
|||ƒ t 	|||f¡ t
||ƒ q¼||
d  }t |¡\}}||k r&tˆ| ˆ|d  ƒD ]j}ˆ| }t||ƒdk�r>t
||ƒ ˆˆ| |	ƒ}||k �r>t|
|||ƒ t 	|||f¡ ||
d  }�q>t|ƒdk�r¼q&nt |¡\}}�q q&|S )Nr   g      ð?é   ç        r   c                 S   s"   g | ]}t  t j¡t  d ¡f‘qS )éÿÿÿÿ)ÚnpÚfloat32ÚinfÚint32)Ú.0r   © r$   úP/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/pynndescent/graph_utils.pyÚ
<listcomp>I   s     zJcreate_component_search.<locals>.custom_search_closure.<locals>.<listcomp>)r   ÚshapeÚranger   ÚsqrtÚsumr"   r   ÚheapqÚheappushr
   Úheappopr	   Úlen)Úquery_pointsÚcandidate_indicesÚkÚepsilonr   Úresultr   r   Znormr   r   r   Zseed_setZn_initial_pointsr   r   r   r   r   r   ©Úalternative_cosineÚalternative_dotr   Údistr   r   r$   r%   Úcustom_search_closure!   sR    


   ÿz6create_component_search.<locals>.custom_search_closure)Ú
pynnd_distr6   r5   Ú	_raw_dataZ_search_graphr   r   Z_distance_funcÚnumbaZnjitÚtypesr    Zuint32r"   Zuint8Zint16)Úindexr8   r$   r4   r%   Úcreate_component_search   s<    ïý?r>   é
   r   c                 C   s¼  dd„ t dƒD ƒ}| tt |¡| jd |ƒ |d< |tt |¡|jd |ƒ |d< d}	|||	  }
|d|	   ¡ }ddg}tj}|d d |d d f}|d sª|d �rª||
||||ƒ\}}}t||ƒ\}}t |jd ƒD ]L}t |jd ƒD ]8}|||f |k rî|||f }||	 | |||f f}qîqÜ||	 }t |d d …df ¡}|d|	  jd |jd k�r„t 	|d|	  |k¡|d|	 < ||d|	 < ||d|	   }
d|	 }	q˜|d |d |fS )Nc                 S   s   g | ]}t jd t jd�‘qS )r   ©Zdtype)r   ZzerosÚint64)r#   r   r$   r$   r%   r&   …   s     z2find_component_connection_edge.<locals>.<listcomp>r   r   r   T)
r(   r   r   rA   r'   Úcopyr!   r   ÚuniqueÚany)Ú
component1Ú
component2Úsearch_closureÚraw_datar   Ú	rng_stateÚsearch_sizer2   r   Z
query_sider/   r0   ÚchangedZ	best_distZ	best_edgeZindsÚdistsÚ_r   r   Znew_indicesr$   r$   r%   Úfind_component_connection_edge{   sF    
ÿÿ    ÿ

rN   c                 C   s”   t | jd | jd ftjd�}t||dk< t tj| jd tjd�| jd ¡|_|  	¡ |_
| 	¡ |_| ¡ }d|j|jdk< | ¡  | |j¡}|S )Nr   r@   r   r   r   )r   r'   r   r    ÚFLOAT32_EPSÚrepeatZaranger"   ÚrowZravelÚcolr   Útocsrr   Zeliminate_zerosÚmaximumÚT)Zneighbor_indicesZneighbor_distancesr3   r$   r$   r%   Úadjacency_matrix_representation¨   s      ÿ ÿ

rV   c           
         s’   t ˆƒ‰t| ƒ\}‰ |  ¡ }ˆ ˆj ‰ ‡ ‡‡‡fdd„‰tj|dd�‡fdd„tt|ƒdƒD ƒƒ}|D ]"\}}}	|	|||f< |	|||f< qf| ¡ S )Nc              	      sx   t  ˆ | k¡d }t  ˆ |k¡d }t||ˆˆjˆjˆjˆd�\}}}ˆjd k	rZˆ |¡}ˆj| }ˆj| }|||fS )Nr   )rJ   )r   ÚwhererN   r:   Z_visitedrI   Z_distance_correctionÚ_vertex_order)Úc1Úc2rE   rF   r   r   r   )Úcomponent_idsr=   rG   rJ   r$   r%   Únew_edgeÊ   s     ù



zconnect_graph.<locals>.new_edgeÚthreads)Ún_jobsZpreferc                 3   s"   | ]\}}t  ˆ ¡||ƒV  qd S )N)ÚjoblibZdelayed)r#   rY   rZ   )r\   r$   r%   Ú	<genexpr>â   s   ÿz connect_graph.<locals>.<genexpr>r   )	r>   r   ZtolilrX   r_   ZParallelr   r(   rS   )
Úgraphr=   rJ   r^   Zn_componentsr3   Z	new_edgesr   r   r   r$   )r[   r=   r\   rG   rJ   r%   Úconnect_graphÁ   s    
þrb   )r?   r   )r?   N)r;   Únumpyr   r+   Zscipy.sparser   Zscipy.sparse.csgraphr   Ú	itertoolsr   Zpynndescent.distancesZ	distancesr9   r_   Zpynndescent.utilsr   r   r   r   r	   r
   Zfinfor    ZepsrO   r>   rN   rV   rb   r$   r$   r$   r%   Ú<module>   s    	j  ø
-