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    ÅmœdÞ'  ã                
   @   sB  d dl mZ d dlZd dlZd dlZd dlmZmZm	Z	m
Z
mZmZmZ d dlmZ e ejd¡ eddƒZejddd	�d
d„ ƒZejejejejdœdd�dd„ ƒZejdejejejdœdd�dd„ ƒZejddd	�dd„ ƒZe ¡ dedddfdd„ƒZe ¡ dedddfdd„ƒZe ¡ deddeddddf	dd„ƒZdS )é    )Úprint_functionN)Útau_rand_intÚ	make_heapÚnew_build_candidatesÚdeheap_sortÚchecked_flagged_heap_pushÚapply_graph_updates_high_memoryÚapply_graph_updates_low_memory)Úsparse_euclideanÚCé   TF)ÚparallelÚcachec                 C   s.  dd„ t | jd ƒD ƒ}t | jd ¡D � ]þ}t | jd ƒD ]ê}| ||f }	|	dk rX q(t |d | jd ƒD ]¸}
| ||
f }|dk rˆ q<|||	 ||	d  … }|||	 ||	d  … }||| ||d  … }||| ||d  … }|||||ƒ}|||	 k �s||| k rl||  |	||f¡ qlq<q(|S )Nc                 S   s   g | ]}d d t jfg‘qS ©éÿÿÿÿ©ÚnpÚinf©Ú.0Úi© r   úU/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/pynndescent/sparse_nndescent.pyÚ
<listcomp>   s     z)generate_leaf_updates.<locals>.<listcomp>r   r   )ÚrangeÚshapeÚnumbaÚprangeÚappend)Ú
leaf_blockÚdist_thresholdsÚindsÚindptrÚdataÚdistÚupdatesÚnr   ÚpÚjÚqÚ	from_indsÚ	from_dataÚto_indsÚto_dataÚdr   r   r   Úgenerate_leaf_updates   s$    r/   )r.   r'   r)   )Úlocalsr   c                 C   s$  |j d }d}|| }t|d ƒD ]ü}	|	| }
t||	d | ƒ}||
|… }|d d d …df }t||| |||ƒ}tt|ƒƒD ]ž}tt|| ƒƒD ]ˆ}|| | \}}}|dks’|dkrºq’t|d | |d | |d | ||t d¡ƒ t|d | |d | |d | ||t d¡ƒ q’q~q"d S )Nr   i   r   r   é   )r   r   Úminr/   Úlenr   r   Úuint8)r!   r"   r#   r$   Úcurrent_graphÚ
leaf_arrayZn_leavesÚ
block_sizeÚn_blocksr   Úblock_startÚ	block_endr   r    r%   r(   Úkr'   r)   r.   r   r   r   Úinit_rp_tree8   sJ    
     ÿ


ú


úr<   )r.   r   Úidx)Zfastmathr0   r   c                 C   s  |j d d }t|ƒD ]ì}|d |df dk rt| t |d | dk¡ ƒD ]´}	t t|ƒ¡| }
|||
 ||
d  … }|||
 ||
d  … }||| ||d  … }||| ||d  … }|||||ƒ}t|d | |d | |d | ||
t d¡ƒ qLqd S )Nr   r   g        r1   )r   r   r   ÚsumÚabsr   r   r4   )Ún_neighborsr!   r"   r#   Úheapr$   Ú	rng_stateÚ	n_samplesr   r(   r=   r*   r+   r,   r-   r.   r   r   r   Úinit_randomc   s&    "
 
 
   ÿrD   c                 C   sø  | j d }dd„ t|ƒD ƒ}| j d }	t |¡D �]À}
t|	ƒD �]°}t| |
|f ƒ}|dk r^q>t||	ƒD ]º}t| |
|f ƒ}|dk r†qh||| ||d  … }||| ||d  … }||| ||d  … }||| ||d  … }|||||ƒ}||| k�s||| krh||
  |||f¡ qht|	ƒD ]Â}t||
|f ƒ}|dk �rN�q,||| ||d  … }||| ||d  … }||| ||d  … }||| ||d  … }|||||ƒ}||| k�sØ||| k�r,||
  |||f¡ �q,q>q0|S )Nr   c                 S   s   g | ]}d d t jfg‘qS r   r   r   r   r   r   r   ƒ   s     z*generate_graph_updates.<locals>.<listcomp>r   )r   r   r   r   Úintr   )Únew_candidate_blockÚold_candidate_blockr    r!   r"   r#   r$   r7   r%   Úmax_candidatesr   r(   r'   r;   r)   r*   r+   r,   r-   r.   r   r   r   Úgenerate_graph_updates}   s>    


rI   é2   é
   gü©ñÒMbP?c              
   C   s  |j d d }d}|| }t ¡ }t|ƒD ]Ö}|
rDtd|d d|ƒ t| |||ƒ\}}d}t|d ƒD ]n}|| }t||d | ƒ}|||… }|||… }| d d d …df }t|||||||ƒ}|t| ||ƒ7 }qf||	| | kr*|
rútd|d dƒ  d S q*d S )Nr   r   é @  ú	ú / ú(	Stopping threshold met -- exiting afterÚ
iterations)	r   r   Úget_num_threadsr   Úprintr   r2   rI   r	   )r5   r!   r"   r#   r@   rB   rH   r$   Ún_itersÚdeltaÚverboseÚ
n_verticesr7   r8   Ú	n_threadsr&   Únew_candidate_neighborsÚold_candidate_neighborsÚcr   r9   r:   rF   rG   r    r%   r   r   r   Ú'nn_descent_internal_low_memory_parallel¬   sD       ÿù
r[   c              
      s(  |j d d }d}|| }t ¡ }‡ fdd„tˆ d j d ƒD ƒ}t|ƒD ]Ø}|
rdtd|d d|ƒ tˆ |||ƒ\}}d}t|d ƒD ]n}|| }t||d | ƒ}|||… }|||… }ˆ d d d …df }t|||||||ƒ}|tˆ ||ƒ7 }q†||	| | krJ|
�rtd|d d	ƒ  d S qJd S )
Nr   r   rL   c                    s$   g | ]}t ˆ d  |  tj¡ƒ‘qS )r   )ÚsetZastyper   Zint64r   ©r5   r   r   r   õ   s   ÿz<nn_descent_internal_high_memory_parallel.<locals>.<listcomp>rM   rN   rO   rP   )	r   r   rQ   r   rR   r   r2   rI   r   )r5   r!   r"   r#   r@   rB   rH   r$   rS   rT   rU   rV   r7   r8   rW   Zin_graphr&   rX   rY   rZ   r   r9   r:   rF   rG   r    r%   r   r]   r   Ú(nn_descent_internal_high_memory_parallelâ   sJ    
þ   ÿù
r^   c                 C   sÜ   |j d d }|	d j d dkrVt||ƒ}|
r@t| |||||ƒ t|| |||||ƒ n2|	d j d |kr€|	d j d |kr€|	}ntdƒ‚|r¬t|| |||||||||d� nt|| |||||||||d� t|d |d ƒS )Nr   r   z Invalid initial graph specified!)rH   r$   rS   rT   rU   )r   r   r<   rD   Ú
ValueErrorr[   r^   r   )r!   r"   r#   r@   rB   rH   r$   rS   rT   Z
init_graphZrp_tree_initr6   Z
low_memoryrU   rC   r5   r   r   r   Ú
nn_descent  sJ    
$õõr`   )Ú
__future__r   ÚlocaleÚnumpyr   r   Zpynndescent.utilsr   r   r   r   r   r   r	   Zpynndescent.sparser
   Ú	setlocaleÚ
LC_NUMERICZEMPTY_GRAPHZnjitr/   Zfloat32Zint32r<   rD   rI   r[   r^   r`   r   r   r   r   Ú<module>   sX   $



*ý

.õ5õ:ò